Papers

List of publications in PDF format.

1. B Jackson, P Schnable, and S Aluru. Consensus Genetic Maps as Median Orders from Inconsistent Sources. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 5(1), 161-171, 2008. [pdf]
2. B Jackson, P Schnable, and S Aluru. Assembly of Large Genomes from Paired Short Reads. 1st Annual Bioinformatics and Computational Biology Conference. To Appear. [pdf]
3. B Jackson, P Schnable, and S Aluru. Parallel Short Sequence Assembly of Transcriptomes. BMC Bioinformatics. 10(S1), S14, 2009. [pdf]
4. B Jackson Computational Methods for Genome Discovery. 23rd International Parallel and Distributed Processing Symposium (Ph.D. forum). 2009.[pdf]



5. B Jackson and S Aluru. Parallel Construction of Bidirected Graphs for Genome Assembly. 37th Annual International Conference on Parallel Processing. 346-353, 2009.
6. B Jackson, S Aluru, and P Schnable. Consensus Genetic Maps: A Graph Theoretic Approach. 4th Annual Computational Systems Bioinformatics Conference 35-43, 2005.
7. B Jackson and S Aluru. Pairwise Sequence Alignment Handbook on Computational Molecular Biology, Chapter 1 Chapman and Hall, Boca Raton, 2006.
8. B Jackson and D Keskar. Methods and Systems to Index and Retrieve Pixel Data. U.S. Patent No. 7,050,629.
9. B Jackson, S Aluru, and P Schnable. Genome Assembly using Summary Features. IEEE/ACM Transactions on Computational Biology and Bioinformatics. (under preparation)
10. B Jackson, S Aluru, and P Schnable. Computational Methods for Genome Discovery. Ph.D. Thesis, Iowa State University. (under preparation)